SciNet Publications

Functional characterization of RebL1 highlights the evolutionary conservation of oncogenic activities of the RBBP4/7 orthologue in Tetrahymena thermophila,
Nucleic Acids Research, 2021;, gkab413

Nabeel‑Shah et al, including M.Ponce
Deploying a Top-100 Supercomputer for Large Parallel Workloads: the Niagara Supercomputer,

M.Ponce, R.Van Zon, S.Northrup, D.Gruner, J.Chen, F.Ertinaz, A.Fedoseev, L.Groer, F.Mao, B.C.Mundim, M.Nolta, J.Pinto, M.Saldarriaga, V.Slavnic, E.J.Spence, C-H.Yu, and W.R.Peltier
Presented at PEARC19 (Chicago, IL)
RACS: Rapid Analysis of ChIP-Seq data for contig based genomes,

M.Ponce, A.Saettone, S.Nabeel‑Shah and J.Fillingham

Trends in Demand, Growth, and Breadth in Scientific Computing Training Delivered by a High-Performance Computing Center,
Journal of Computational Science Education vol 10(1) (2019).
R.Van Zon, M.Ponce, E.Spence and D.Gruner
Presented at the Fifth Workshop on Best Practices for Enhancing HPC Training and Education (BPHTE18) @ SC18
Using text-mined trait data to test for cooperate-and-radiate co-evolution between ants and plants,
K.M.Kaur, P-J.G.Malé, E.Spence, C.Gomez, M.E.Frederickson
PLOS Computational Biology 10 (2019).
Bridging the Educational Gap between Emerging and Established Scientific Computing Disciplines,
Journal of Computational Science Education, vol 10(1) (2019).
M.Ponce, E.Spence, R.Van Zon and D.Gruner
Presented at the Workshop on Strategies for Enhancing HPC Education and Training (SEHET18) @ PEARC18
Software-Driven Capabilities of a Ultra-High-Resolution Video Wall,
In prep. (2018)
R.Van Zon and M.Ponce
The bromodomain-containing protein Ibd1 links multiple chromatin-related protein complexes to highly expressed genes in Tetrahymena thermophila,
Epigenetics & Chromatin (2018)
A.Saettone, J.Garg, J‑P.Lambert, S.Nabeel‑Shah, M.Ponce, A.Burtch, C.Thuppu Mudalige, A‑C.Gingras, R.E.Pearlman and J.Fillingham,
The influence of neutrinos on r-process nucleosynthesis in the ejecta of black hole–neutron star mergers,
Monthly Notices of the Royal Astronomical Society (2017) Volume 464, Issue 4, Pages 3907–3919.
L.F.Roberts, J.Lippuner, M.D.Duez, J.A.Faber, F.Foucart, J.C.Lombardi, S.Ning, C.D.Ott, M.Ponce

Scientific Computing, High-Performance Computing and Data Science in Higher Education,
Journal of Computational Science Education, vol 10(1) (2019).
arXiv version (2016).
M.Ponce, E.Spence, D.Gruner and R.Van Zon
Presented at the Workshop on Strategies for Enhancing HPC Education and Training (SEHET18) @ PEARC18

Detecting the orientation of magnetic fields in galaxy clusters,
Nature Phys.6:520 (2010).
C. Pfrommer, L J. Dursi
SciNet: Lessons Learned from Building a Power-efficient Top-20 System and Data Centre,
Journal of Physics: Conference Series (2010) Vol.256, Nbr.1.
C.Loken, D.Gruner, L.Groer, R.Peltier, N.Bunn, M.Craig, T.Henriques, J.Dempsey, C-H.Yu, J.Chen, L J.Dursi, J.Chong, S.Northrup, J.Pinto, N.Knecht and R.Van Zon