 | covid19.analytics: An R Package to Obtain, Analyze and Visualize Data from the Corona Virus Disease Pandemic,
https://arxiv.org/abs/2009.01091
Journal of Open Source Software, 6(60), 2995 (2021)
M.Ponce and A.Sanhdel |
 | Functional characterization of RebL1 highlights the evolutionary conservation of oncogenic activities of the RBBP4/7 orthologue in Tetrahymena thermophila,
Nucleic Acids Res. (2021), Vol 49, Issue 11 (pp.6196-6212) -- bioRxiv 2020.11.07.372946
Nabeel-Shah et al, including M.Ponce |
 | Deploying a Top-100 Supercomputer for Large Parallel Workloads: the Niagara Supercomputer,
M.Ponce, R.Van Zon, S.Northrup, D.Gruner, J.Chen, F.Ertinaz, A.Fedoseev, L.Groer, F.Mao, B.C.Mundim, M.Nolta, J.Pinto, M.Saldarriaga, V.Slavnic, E.J.Spence, C-H.Yu, and W.R.Peltier
https://arxiv.org/abs/1907.13600 -- Presented at PEARC19 (Chicago, IL). |
 | Software-Enhanced Teaching and Visualization Capabilities of an Ultra-High-Resolution Video Wall,
R.Van Zon and M.Ponce
https://arxiv.org/abs/1908.00056 -- Presented at PEARC'19 (Chicago, IL). |
 | The Med31 Conserved Component of the Divergent Mediator Complex in Tetrahymena thermophila Participates in Developmental Regulation,
Current Biology, Vol 29 Issue 13 (2019)
Garg et al, including M.Ponce |
 | RACS: Rapid Analysis of ChIP-Seq data for contig based genomes,
BMC Bioinformatics 20, 533 (2019) -- https://arxiv.org/abs/1905.02771
M.Ponce, A.Saettone, S.Nabeel‑Shah and J.Fillingham |
 | Trends in Demand, Growth, and Breadth in Scientific Computing Training Delivered by a High-Performance Computing Center,
Journal of Computational Science Education vol 10(1) (2019).
R.Van Zon, M.Ponce, E.Spence and D.Gruner
Presented at the Fifth Workshop on Best Practices for Enhancing HPC Training and Education (BPHTE18) @ SC18 |
 | Using text-mined trait data to test for cooperate-and-radiate co-evolution between ants and plants,
PLOS Computational Biology 10 (2019) -- https://www.biorxiv.org/content/10.1101/306787v1
K.M.Kaur, P-J.G.Malé, E.Spence, C.Gomez, M.E.Frederickson. |
 | Bridging the Educational Gap between Emerging and Established Scientific Computing Disciplines,
Journal of Computational Science Education, vol 10(1) (2019).
M.Ponce, E.Spence, R.Van Zon and D.Gruner
Presented at the Workshop on Strategies for Enhancing HPC Education and Training (SEHET18) @ PEARC18 |
 | The bromodomain-containing protein Ibd1 links multiple chromatin-related protein complexes to highly expressed genes in Tetrahymena thermophila,
Epigenetics & Chromatin (2018)
A.Saettone, J.Garg, J‑P.Lambert, S.Nabeel‑Shah, M.Ponce, A.Burtch, C.Thuppu Mudalige, A‑C.Gingras, R.E.Pearlman and J.Fillingham, |
 | The influence of neutrinos on r-process nucleosynthesis in the ejecta of black hole–neutron star mergers,
Monthly Notices of the Royal Astronomical Society (2017) Volume 464, Issue 4, Pages 3907–3919.
L.F.Roberts, J.Lippuner, M.D.Duez, J.A.Faber, F.Foucart, J.C.Lombardi, S.Ning, C.D.Ott, M.Ponce |
 | Scientific Computing, High-Performance Computing and Data Science in Higher Education,
Journal of Computational Science Education, vol 10(1) (2019).
arXiv version (2016).
M.Ponce, E.Spence, D.Gruner and R.Van Zon
Presented at the Workshop on Strategies for Enhancing HPC Education and Training (SEHET18) @ PEARC18 |
 | Detecting the orientation of magnetic fields in galaxy clusters,
Nature Phys.6:520 (2010).
C. Pfrommer, L J. Dursi |
 | SciNet: Lessons Learned from Building a Power-efficient Top-20 System and Data Centre,
Journal of Physics: Conference Series (2010) Vol.256, Nbr.1.
C.Loken, D.Gruner, L.Groer, R.Peltier, N.Bunn, M.Craig, T.Henriques, J.Dempsey, C-H.Yu, J.Chen, L J.Dursi, J.Chong, S.Northrup, J.Pinto, N.Knecht and R.Van Zon |
